Okay, it looks like I didn't click the advanced skill level button when I set up the league BUT that only applies to skill level AND doesn't effect any rules. I know that it is set up for weighted waivers so I don't believe there will be any issue but I will check with the Commish to be sure.
Addendum:
I have emailed the commish just to be certain that there are no untoward issues. I will keep the league advised.